Publication

12. Muhammad D, Clark, N.M., Tharp, N.E., Chatt, E.C., Vierstra, R.D. and Bartel, B. (2024), Global impacts of peroxisome and pexophagy dysfunction revealed through multi-omics analyses of lon2 and atg2 mutants. Plant J, 120: 2563-2583.

11. Schmittling S*., Muhammad D*., Haque S., Long T.A., Williams C. (2023) Cellular Clarity: A logistic regression approach to identify root epidermal regulators of iron deficiency response. BMC Genomics. 24: 620. (1)

10. Muhammad D*., Alameldin H.F*., Oh S., Montgomery B.L., Warpeha K.M. (2023) Arogenate Dehydratases: Unique roles in light-directed development during the seed-to-seedling transition in Arabidopsis thaliana. Frontiers in Plant Science. 14: 1220732.  (4)

9. Muhammad D*., Smith K.A*., Bartel B. (2022) Plant Peroxisome Proteostasis—Establishing, Renovating, and Dismantling the Peroxisomal Proteome. Essays in Biochemistry. 66: 229–242.  (7)

8. Muhammad D., Clark N.M., Haque S., Williams C.M., Sozzani R., Long T.A. (2022) POPEYE intercellular localization mediates cell-specific iron deficiency responses. Plant Physiology. 190: 2017-2032.  (10)

7. Koryachko, A., Matthiadis A., Haque, S., Muhammad D., Ducoste J., Tuck J., Long T.A., Williams C. (2019) Dynamic modeling of iron deficiency response in A. thaliana roots. in silico Plants. 1: diz005 (7)

6. Muhammad D*., Schmittling S*., Williams C., Long T.A. (2016) More than Meets the Eye: Emergent Properties of Transcription Factors Networks in Arabidopsis. BBA Gene Regulatory Mechanisms. 1860: 64-74. (11)

5. Para A., Muhammad D., Orozco-Nunnelly D., Memishi R., Alvarez S., Naldrett M., Warpeha K. (2016) The dehydratase ADT3 affects ROS homeostasis and cotyledon development. Plant Physiology. 172: 1045-1060. (38)

4. Koryachko, A., Matthiadis A., Muhammad D., Foret J., Brady S.M., Ducoste J., Tuck J., Long T.A., Williams C. (2015) Clustering and Differential Alignment Algorithm: Identification of early stage regulators in the Arabidopsis thaliana iron deficiency response. PLOS One. 10: e0136591.   (15)

3. Orozco-Nunnelly D.A., Muhammad, D., Liakaite, V., Green, S., Warpeha K.M. (2014) Pirin1 Is a Non-Circadian Regulated Transcript and Protein, but Highly Responsive to Light/Dark Periods in the Seed-to-Seedling Transition in Arabidopsis thaliana. Plant Molecular Biology Reporter. 33: 1336-1348.
(4)

2. Sullivan, J., Muhammad, D., Warpeha, K.M. (2014) Phenylalanine is required to promote specific developmental responses and prevent cellular damage in response to UV-B in soybean (Glycine max) during the seed-to-seedling transition. PLOS One. 9: e112301. (18)

1. Orozco-Nunnelly D.A., Muhammad, D., Mezzich R., Lee, B.S., Jayathilaka L., Kaufman L.S., Green, S., Warpeha K.M. (2014) Pirin1 (PRN1) is a multifunctional protein that regulates quercetin, and impacts light and UV responses in the seed-to-seedling transition of Arabidopsis thaliana. PLOS One. 9: e93371. (39)